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processing/clean_external.py
1030 lines44,800 bytessha256 0a2b4d686205
"""External dataset cleaning pipeline (Phase-2 sources). Cleans and normalizes the 11 external datasets collected bycollectors/{tranco,majestic,google_taxonomy,viseca,tabformer,ieee_cis,ulb_creditcard,hackaprompt,bipia,agentdojo,tensortrust}.py. Usage: python -m processing.clean_external # all collected sources python -m processing.clean_external tabformer # a single source Memory contract (host has ~2GB available): every large file is processedchunk-streamed (CSV chunks, bz2 line streaming, ARFF direct read); nothingbig is fully materialized in RAM. Outputs: data/processed/external/<source>/... full cleaned parquet (gitignored, reproducible via `make clean-external`) data/exports/external/<source>/... compact tracked exports (csv.gz/json) data/exports/external/stats/*.json per-source cleaning stats data/exports/external/EXTERNAL_QUALITY_REPORT.md generated summary""" from __future__ import annotations import bz2import csvimport datetime as dtimport ioimport jsonimport pathlibimport reimport sysimport zipfile import numpy as npimport pandas as pd from collectors import common ROOT = common.ROOTRAW = ROOT / "data" / "raw"PEXT = ROOT / "data" / "processed" / "external"EXPORTS = ROOT / "data" / "exports" / "external"STATS = EXPORTS / "stats" SEED = 42DOMAIN_RE = re.compile(r"^(?=.{1,253}$)([a-z0-9]([a-z0-9-]{0,61}[a-z0-9])?\.)+[a-z]{2,63}$") def _fresh(path: pathlib.Path) -> pathlib.Path: path.mkdir(parents=True, exist_ok=True) return path def _newest(pattern: str) -> pathlib.Path | None: hits = sorted(RAW.glob(pattern)) return hits[-1] if hits else None def _bool_series(s: pd.Series) -> pd.Series: return s.map({"True": True, "False": False, True: True, False: False}).astype("boolean") # ----------------------------------------------------------------- domains def clean_tranco() -> dict: src = _newest("tranco/tranco_top1m_*.zip") if not src: return {"status": "missing_raw"} out = _fresh(PEXT / "tranco") with zipfile.ZipFile(src) as zf: with zf.open(zf.namelist()[0]) as f: df = pd.read_csv(f, header=None, names=["rank", "domain"]) n_raw = len(df) df["domain"] = df["domain"].str.strip().str.lower() bad = ~df["domain"].str.match(DOMAIN_RE) n_bad = int(bad.sum()) df = df[~bad] dup = int(df["domain"].duplicated().sum()) df = df.drop_duplicates("domain").sort_values("rank") df.to_parquet(out / "tranco_top1m.parquet", index=False) df.to_csv(_fresh(EXPORTS / "tranco") / "tranco_top1m.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows_raw": n_raw, "rows_clean": len(df), "invalid_domains": n_bad, "dup_domains": dup, "list_date": src.stem.removeprefix("tranco_top1m_")} def clean_majestic() -> dict: src = _newest("majestic/majestic_million_*.csv") if not src: return {"status": "missing_raw"} out = _fresh(PEXT / "majestic") df = pd.read_csv(src) n_raw = len(df) df["Domain"] = df["Domain"].str.strip().str.lower() bad = ~df["Domain"].str.match(DOMAIN_RE) n_bad = int(bad.sum()) df = df[~bad].drop_duplicates("Domain") keep = ["GlobalRank", "TldRank", "Domain", "TLD", "RefSubNets", "RefIPs", "PrevGlobalRank", "PrevTldRank", "PrevRefSubNets", "PrevRefIPs"] df = df[keep].astype({c: "int64" for c in keep if c not in ("Domain", "TLD")}) df.to_parquet(out / "majestic_million.parquet", index=False) df.to_csv(_fresh(EXPORTS / "majestic") / "majestic_million.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows_raw": n_raw, "rows_clean": len(df), "invalid_domains": n_bad} def clean_google_taxonomy() -> dict: src = _newest("google_taxonomy/taxonomy_en-US_*.txt") if not src: return {"status": "missing_raw"} rows = [] for line in src.read_text(encoding="utf-8").splitlines(): line = line.strip() if not line or line.startswith("#"): continue tid, _, path = line.partition(" - ") if not tid.isdigit(): continue parts = [p.strip() for p in path.split(" > ")] rows.append({"taxonomy_id": int(tid), "path": path, "depth": len(parts), **{ f"level_{i+1}": parts[i] if i < len(parts) else None for i in range(5)}}) df = pd.DataFrame(rows) df.to_parquet(_fresh(PEXT / "google_taxonomy") / "google_product_taxonomy.parquet", index=False) df.to_csv(_fresh(EXPORTS / "google_taxonomy") / "google_product_taxonomy.csv", index=False) return {"status": "ok", "rows": len(df), "max_depth": int(df["depth"].max()), "distinct_l1": int(df["level_1"].nunique())} # ------------------------------------------------------------------ viseca def _viseca_clean_table(df: pd.DataFrame) -> pd.DataFrame: for c in df.columns: if c == "timestamp": df[c] = pd.to_datetime(df[c], utc=True, errors="coerce") continue vals = df[c].dropna().unique()[:8] if all(isinstance(v, str) and v in ("true", "false") for v in vals) and len(vals): df[c] = df[c].map({"true": True, "false": False}).astype("boolean") elif all(isinstance(v, str) and re.fullmatch(r"-?\d+(\.\d+)?", v or "x") for v in vals) and len(vals): df[c] = pd.to_numeric(df[c], errors="coerce") return df.convert_dtypes() def clean_viseca() -> dict: data_dir = next((RAW / "viseca" / "extracted").glob("*/data"), None) if not data_dir: return {"status": "missing_raw"} out = _fresh(PEXT / "viseca") exp = _fresh(EXPORTS / "viseca") # integrity: verify extracted CSVs against the pack's own sha256 manifest meta = json.loads((data_dir / "metadata.json").read_text()) hashes = {f["path"]: f.get("sha256") for f in meta.get("files", []) if f.get("format") == "csv"} import hashlib verified, mismatched = 0, [] for rel, want in hashes.items(): p = data_dir / rel if not p.exists(): mismatched.append(f"{rel}: missing") continue got = hashlib.sha256(p.read_bytes()).hexdigest() if got == want: verified += 1 else: mismatched.append(rel) stats: dict = {"status": "ok", "sha256_verified": verified, "sha256_mismatch": mismatched, "tables": {}} for p in sorted(data_dir.glob("*.csv")): df = _viseca_clean_table(pd.read_csv(p)) name = p.stem df.to_parquet(out / f"{name}.parquet", index=False) df.to_csv(exp / f"{name}.csv.gz", index=False, compression="gzip") stats["tables"][name] = {"rows": len(df), "cols": int(df.shape[1])} return stats # --------------------------------------------------------------- tabformer _TAB_SCHEMA = { "User": "int16", "Card": "int16", "Year": "int16", "Month": "int8", "Day": "int8", "Time": "string", "Amount": "string", "Use Chip": "string", "Merchant Name": "string", "Merchant City": "string", "Merchant State": "string", "Zip": "string", "MCC": "string", "Errors?": "string", "Is Fraud?": "string",} def clean_tabformer() -> dict: import tarfile import pyarrow as pa import pyarrow.parquet as pq src = RAW / "tabformer" / "tabformer_transactions.tgz" if not src.exists(): return {"status": "missing_raw"} out_dir = _fresh(PEXT / "tabformer") csv_path = out_dir / "card_transaction.v1.csv" if not csv_path.exists(): with tarfile.open(src, "r:gz") as tf: tf.extractall(out_dir, filter="data") cols = list(_TAB_SCHEMA) fraud_rate_warn = [] stats = {"status": "ok", "rows": 0, "frauds": 0, "nulls_errors": 0, "users": set(), "years": set(), "use_chip": {}} rng = np.random.default_rng(SEED) samples: list[pd.DataFrame] = [] writer = None target = out_dir / "tabformer_clean.parquet" try: for chunk in pd.read_csv(csv_path, chunksize=500_000, dtype=_TAB_SCHEMA, na_values=[""], keep_default_na=True): chunk["Amount"] = (chunk["Amount"].astype("string").str.replace("$", "", regex=False) .astype("float32")) fraud = (chunk["Is Fraud?"] == "Yes") stats["rows"] += len(chunk) stats["frauds"] += int(fraud.sum()) stats["nulls_errors"] += int(chunk["Errors?"].isna().sum()) stats["users"].update(pd.unique(chunk["User"]).tolist()) stats["years"].update(pd.unique(chunk["Year"]).tolist()) for k, v in chunk["Use Chip"].value_counts().items(): stats["use_chip"][k] = stats["use_chip"].get(k, 0) + int(v) clean = chunk.copy() clean["Is Fraud?"] = fraud.astype("int8") table = pa.Table.from_pandas(clean, preserve_index=False) if writer is None: writer = pq.ParquetWriter(target, table.schema, compression="zstd") writer.write_table(table) # stratified sample: all frauds + ~0.5% of legit rows (cap 120k) legit = clean[~fraud] take = legit.loc[rng.random(len(legit)) < 0.005] samples.append(clean[fraud]) samples.append(take) finally: if writer: writer.close() sample = pd.concat(samples, ignore_index=True) if len(sample) > 130_000: sample = sample.iloc[rng.choice(len(sample), 130_000, replace=False)] sample.to_csv(_fresh(EXPORTS / "tabformer") / "tabformer_sample.csv.gz", index=False, compression="gzip") csv_path.unlink() # 2.7GB intermediate; tgz stays cached in raw/ if stats["rows"] and stats["frauds"] / stats["rows"] > 0.02: fraud_rate_warn.append("fraud rate implausible — verify parse") return {"status": "ok", "rows": stats["rows"], "frauds": stats["frauds"], "fraud_rate": round(stats["frauds"] / max(stats["rows"], 1), 6), "unique_users": len(stats["users"]), "years": f"{min(stats['years'])}-{max(stats['years'])}" if stats["years"] else None, "nulls_errors": stats["nulls_errors"], "use_chip": stats["use_chip"], "sample_rows": len(sample), "warnings": fraud_rate_warn} # ---------------------------------------------------------------- ieee-cis def clean_ieee_cis() -> dict: import pyarrow as pa import pyarrow.parquet as pq tx = RAW / "ieee_cis" / "ieee_cis_train_transaction.csv" ident = RAW / "ieee_cis" / "ieee_cis_train_identity.csv" if not tx.exists(): return {"status": "missing_raw"} # identity is small (144k x 41): load once, downcast, merge per chunk idf = pd.read_csv(ident) id_obj = {c: "float32" for c in idf.columns if c.startswith("id_") and pd.api.types.is_numeric_dtype(idf[c])} idf = idf.astype(id_obj) for c in idf.columns: if c not in ("TransactionID",) and not pd.api.types.is_numeric_dtype(idf[c]): mcol = idf[c].map({"T": True, "F": False, "True": True, "False": False}) if mcol.notna().mean() > 0.9: # T/F-typed strings -> boolean idf[c] = mcol.astype("boolean") for c in ("id_01", "id_02", "id_03", "id_05"): if c in idf: # spot null-rate stats pass vcols = [f"V{i}" for i in range(1, 340)] ccols = [f"C{i}" for i in range(1, 15)] dcols = [f"D{i}" for i in range(1, 16)] mcols = [f"M{i}" for i in range(1, 10)] out_dir = _fresh(PEXT / "ieee_cis") writer = None stats = {"rows": 0, "frauds": 0, "with_identity": 0, "null_V": 0} rng = np.random.default_rng(SEED) samples: list[pd.DataFrame] = [] target = out_dir / "ieee_cis_train_clean.parquet" try: for chunk in pd.read_csv(tx, chunksize=100_000): stats["rows"] += len(chunk) chunk["isFraud"] = chunk["isFraud"].astype("int8") stats["frauds"] += int(chunk["isFraud"].sum()) for c in vcols + ccols + dcols + ["addr1", "addr2", "dist1", "dist2", "TransactionAmt"]: if c in chunk: chunk[c] = chunk[c].astype("float32") stats["null_V"] += int(chunk[vcols].isna().any(axis=1).sum()) for c in mcols: if c in chunk: chunk[c] = chunk[c].map({"T": True, "F": False}).astype("boolean") merged = chunk.merge(idf, on="TransactionID", how="left") stats["with_identity"] += int(merged["id_01"].notna().sum() if "id_01" in merged else 0) table = pa.Table.from_pandas(merged, preserve_index=False) if writer is None: writer = pq.ParquetWriter(target, table.schema, compression="zstd") writer.write_table(table) fraud = merged["isFraud"] == 1 samples.append(merged[fraud]) legit = merged[~fraud] samples.append(legit.loc[rng.random(len(legit)) < 0.05]) finally: if writer: writer.close() sample = pd.concat(samples, ignore_index=True) sample.to_csv(_fresh(EXPORTS / "ieee_cis") / "ieee_cis_train_sample.csv.gz", index=False, compression="gzip") expected = {"rows": 590540, "frauds": 20663} # verified vs Kaggle kernels: isFraud 0:569877, 1:20663 checks = { "rows_ok": stats["rows"] == expected["rows"], "frauds_ok": stats["frauds"] == expected["frauds"], } return {"status": "ok", **stats, "expected": expected, "integrity_checks": checks, "fraud_rate": round(stats["frauds"] / max(stats["rows"], 1), 6), "sample_rows": len(sample)} # ------------------------------------------------------------- ulb (OpenML) def clean_ulb_creditcard() -> dict: src = _newest("ulb_creditcard/ulb_creditcard_*.arff") if not src: return {"status": "missing_raw"} names: list[str] = [] with src.open(encoding="utf-8", errors="replace") as f: header_lines = 0 for line in f: header_lines += 1 s = line.strip().lower() if s.startswith("@attribute"): names.append(line.split()[1]) elif s.startswith("@data"): break df = pd.read_csv(src, skiprows=header_lines, header=None, names=names, quotechar="'") n_raw = len(df) dup = int(df.duplicated().sum()) df["Class"] = df["Class"].astype("int8") df["Amount"] = df["Amount"].astype("float32") df.to_parquet(_fresh(PEXT / "ulb_creditcard") / "ulb_creditcard_clean.parquet", index=False) fraud = df[df["Class"] == 1] legit = df[df["Class"] == 0].sample(min(20_000, (df["Class"] == 0).sum()), random_state=SEED) pd.concat([fraud, legit]).to_csv( _fresh(EXPORTS / "ulb_creditcard") / "ulb_creditcard_fraud_plus_sample.csv.gz", index=False, compression="gzip") checks = {"rows_ok": n_raw == 284807, "frauds_ok": int((df["Class"] == 1).sum()) == 492} return {"status": "ok", "rows": n_raw, "duplicates_kept": dup, "frauds": int((df["Class"] == 1).sum()), "fraud_rate": round(float((df["Class"] == 1).mean()), 6), "integrity_checks": checks} # ------------------------------------------------------------------ bipia def clean_bipia() -> dict: bench = next((RAW / "bipia" / "extracted").glob("*/benchmark"), None) if not bench: return {"status": "missing_raw"} rows: list[dict] = [] def add_text_attacks(path: pathlib.Path, domain: str): data = json.loads(path.read_text()) split = "train" if "train" in path.name else "test" for attack_type, texts in data.items(): for t in texts: rows.append({"domain": domain, "split": split, "attack_type": attack_type, "kind": "attack_text", "text": t, "ideal": None}) for name in ("text_attack_train.json", "text_attack_test.json"): add_text_attacks(bench / name, "text") for name in ("code_attack_train.json", "code_attack_test.json"): add_text_attacks(bench / name, "code") per_domain_counts = {} for sub in ("qa", "email", "table", "code"): d = bench / sub if not d.exists(): continue for split in ("train", "test"): p = d / f"{split}.jsonl" if not p.exists(): continue n = 0 with p.open() as f: for line in f: if not line.strip(): continue rec = json.loads(line) n += 1 rows.append({"domain": sub, "split": split, "attack_type": None, "kind": "context_pair", "text": str(rec.get("context", ""))[:8000], "ideal": str(rec.get("ideal", ""))[:500]}) per_domain_counts[f"{sub}.{split}"] = n df = pd.DataFrame(rows) df.to_parquet(_fresh(PEXT / "bipia") / "bipia_benchmark.parquet", index=False) attacks = df[df["kind"] == "attack_text"][["domain", "split", "attack_type", "text"]] attacks.to_csv(_fresh(EXPORTS / "bipia") / "bipia_attack_texts.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows": len(df), "attack_texts": len(attacks), "context_pairs": per_domain_counts} # --------------------------------------------------------------- agentdojo def clean_agentdojo() -> dict: root = RAW / "agentdojo" / "extracted" / "agentdojo-main" if not root.exists(): return {"status": "missing_raw"} out = _fresh(PEXT / "agentdojo") runs = root / "runs" results: list[dict] = [] files = sorted(runs.glob("*/*/*/*/*.json")) for p in files: try: d = json.loads(p.read_text()) except Exception: continue results.append({ "model": p.relative_to(runs).parts[0], "suite": d.get("suite_name") or p.relative_to(runs).parts[1], "task_id": d.get("user_task_id") or p.relative_to(runs).parts[2], "injection_task_id": d.get("injection_task_id"), "attack_type": d.get("attack_type") or p.relative_to(runs).parts[3], "attack_technique": p.stem, "utility": d.get("utility"), "security": d.get("security"), "error": d.get("error"), "duration_s": d.get("duration"), }) rdf = pd.DataFrame(results) rdf.to_parquet(out / "agentdojo_benchmark_results.parquet", index=False) rdf.to_csv(_fresh(EXPORTS / "agentdojo") / "agentdojo_benchmark_results.csv.gz", index=False, compression="gzip") # suites inventory: user tasks + injection vectors per suite version inv = [] for p in sorted((root / "src" / "agentdojo" / "default_suites").rglob("*.py")): rel = p.relative_to(root / "src" / "agentdojo" / "default_suites") inv.append({"suite_version": rel.parts[0], "suite": rel.parts[1] if len(rel.parts) > 1 else None, "file": str(rel), "kind": "injections" if "injection" in p.name else "tasks"}) (out / "suites_inventory.jsonl").write_text( "\n".join(json.dumps(r) for r in inv)) (_fresh(EXPORTS / "agentdojo") / "suites_inventory.jsonl").write_text( "\n".join(json.dumps(r) for r in inv)) util = pd.to_numeric(rdf["utility"], errors="coerce") sec = pd.to_numeric(rdf["security"], errors="coerce") return {"status": "ok", "result_files": len(rdf), "models": int(rdf["model"].nunique()), "suites": sorted(rdf["suite"].dropna().unique().tolist()), "utility_true_rate": round(float(util.mean()), 4) if len(rdf) else None, "security_true_rate": round(float(sec.mean()), 4) if len(rdf) else None, "suite_files": len(inv)} # -------------------------------------------------------------- tensortrust import pyarrow as paimport pyarrow.parquet as pq _TT_ATTACKS_SCHEMA = pa.schema([ ("attack_id", pa.int64()), ("attacker_id_anonymized", pa.int64()), ("defender_id_anonymized", pa.int64()), ("defense_id", pa.int64()), ("attacker_balance_before", pa.float64()), ("defender_balance_before", pa.float64()), ("attacker_balance_gain", pa.int64()), ("defender_balance_gain", pa.int64()), ("opening_defense", pa.string()), ("attacker_input", pa.string()), ("closing_defense", pa.string()), ("access_code", pa.string()), ("llm_choice", pa.string()), ("llm_output", pa.string()), ("output_is_access_granted", pa.bool_()), ("is_self_attack", pa.bool_()), ("timestamp", pa.string()),])_TT_DEFENSES_SCHEMA = pa.schema([ ("defense_id", pa.int64()), ("defender_id_anonymized", pa.int64()), ("opening_defense", pa.string()), ("closing_defense", pa.string()), ("access_code", pa.string()), ("llm_choice", pa.string()), ("llm_output", pa.string()), ("output_is_access_granted", pa.bool_()), ("timestamp", pa.string()),]) def _tt_coerce(v, dtype): if v is None or (isinstance(v, str) and v.strip() in ("", "nan", "None")): return None try: if pa.types.is_boolean(dtype): return v if isinstance(v, bool) else str(v).strip().lower() == "true" if pa.types.is_integer(dtype): return int(float(v)) if pa.types.is_floating(dtype): return float(v) return str(v) except (TypeError, ValueError): return None def _tt_clean_stream(bz2_path: pathlib.Path, target: pathlib.Path, schema: pa.Schema) -> tuple[int, pd.DataFrame]: """Stream a Tensor Trust raw jsonl.bz2 dump into a typed parquet file. Raw values arrive as JSON strings ("True"/"nan"/"1234"); every field is coerced to an explicit schema so leading nulls can't poison inference. """ writer = pq.ParquetWriter(target, schema, compression="zstd") n = 0 samples: list[dict] = [] sample_rng = np.random.default_rng(SEED) batch: list[dict] = [] names = [f.name for f in schema] with bz2.open(bz2_path, "rt", encoding="utf-8") as f: for line in f: if not line.strip(): continue rec = json.loads(line) clean = {name: _tt_coerce(rec.get(name), schema.field(name).type) for name in names} batch.append(clean) n += 1 if len(batch) >= 5_000: writer.write_table(pa.Table.from_pylist(batch, schema=schema)) batch = [] if sample_rng.random() < 0.05 and len(samples) < 15_000: samples.append({k: (str(v)[:200] if isinstance(v, str) else v) for k, v in clean.items()}) if batch: writer.write_table(pa.Table.from_pylist(batch, schema=schema)) writer.close() return n, pd.DataFrame(samples) def clean_tensortrust() -> dict: out = _fresh(PEXT / "tensortrust") exp = _fresh(EXPORTS / "tensortrust") attacks_raw = RAW / "tensortrust" / "raw-data__v2__raw_dump_attacks.jsonl.bz2" defenses_raw = RAW / "tensortrust" / "raw-data__v2__raw_dump_defenses.jsonl.bz2" stats: dict = {"status": "ok"} if attacks_raw.exists(): n, sample = _tt_clean_stream(attacks_raw, out / "attacks_v2_clean.parquet", _TT_ATTACKS_SCHEMA) sample.to_csv(exp / "tensortrust_attacks_sample.csv.gz", index=False, compression="gzip") granted = sample["output_is_access_granted"] stats["attacks"] = {"rows": n, "sample_rows": len(sample), "granted_rate_sample": round(float(granted.mean()), 4)} if defenses_raw.exists(): n, sample = _tt_clean_stream(defenses_raw, out / "defenses_v2_clean.parquet", _TT_DEFENSES_SCHEMA) sample.to_csv(exp / "tensortrust_defenses_sample.csv.gz", index=False, compression="gzip") stats["defenses"] = {"rows": n, "sample_rows": len(sample)} for rel in ("benchmarks__hijacking-robustness__v1__hijacking_robustness_dataset.jsonl", "benchmarks__extraction-robustness__v1__extraction_robustness_dataset.jsonl", "detecting-extractions__v1__prompt_extraction_detection.jsonl"): src = RAW / "tensortrust" / rel if src.exists(): n = sum(1 for line in src.open() if line.strip()) import shutil shutil.copy(src, exp / rel.replace("__", "/").replace("/", "_")) stats.setdefault("benchmarks", {})[rel] = n return stats # -------------------------------------------------------------- hackaprompt def clean_hackaprompt() -> dict: blocked = _newest("hackaprompt/blocked_*.json") if blocked: return {"status": "blocked", "reason": json.loads(blocked.read_text())["reason"]} src = RAW / "hackaprompt" / "hackaprompt.parquet" if not src.exists(): return {"status": "missing_raw"} df = pd.read_parquet(src) df.to_parquet(_fresh(PEXT / "hackaprompt") / "hackaprompt_clean.parquet", index=False) return {"status": "ok", "rows": len(df), "cols": int(df.shape[1])} # --------------------------------------------------------------- threatfox def _read_comment_csv(path: pathlib.Path) -> pd.DataFrame: """abuse.ch-style CSV: header (and notes) live in `#` comment lines. The column header is the comment line starting with `# "col1","col2"...`. """ header: str | None = None lines = [] with path.open(encoding="utf-8", errors="replace") as f: for line in f: if line.startswith("# ") and '"' in line and header is None \ and "," in line: header = line[1:].lstrip() continue if not line.startswith("#"): lines.append(line) if header: lines.insert(0, header) return pd.read_csv(io.StringIO("".join(lines)), skipinitialspace=True) def _newest_data(pattern: str) -> pathlib.Path | None: """_newest but excluding .meta.json sidecars that share the glob.""" hits = sorted(p for p in RAW.glob(pattern) if not p.name.endswith(".meta.json")) return hits[-1] if hits else None def _host_from_ioc(value: str, ioc_type: str) -> str | None: v = (value or "").strip() if not v: return None if ioc_type == "url": from urllib.parse import urlparse try: return (urlparse(v).hostname or "").lower() or None except ValueError: return None if ioc_type == "domain": return v.lower() if ioc_type == "ip:port": return v.rsplit(":", 1)[0].strip("[]").lower() if ioc_type in ("ip", "ipv4", "ipv6"): return v.lower() return None def clean_threatfox() -> dict: src = _newest("threatfox/threatfox_csv_recent_*.csv") if not src: return {"status": "missing_raw"} df = _read_comment_csv(src) n_raw = len(df) df.columns = [c.strip().lower() for c in df.columns] for c in df.select_dtypes("object"): df[c] = df[c].astype("string").str.strip() df["entity"] = [_host_from_ioc(v, t) for v, t in zip(df["ioc_value"], df["ioc_type"])] n_no_entity = int(df["entity"].isna().sum()) df = df.dropna(subset=["entity"]) df["confidence_level"] = pd.to_numeric(df["confidence_level"], errors="coerce").astype("Int64") out = _fresh(PEXT / "threatfox") df.to_parquet(out / "threatfox_recent.parquet", index=False) df.to_csv(_fresh(EXPORTS / "threatfox") / "threatfox_recent.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows_raw": n_raw, "rows_clean": len(df), "no_host_extracted": n_no_entity, "unique_domains_ips": int(df["entity"].nunique()), "ioc_types": {k: int(v) for k, v in df["ioc_type"].value_counts().items()}} # ------------------------------------------------------------ feodotracker def clean_feodotracker() -> dict: src = _newest_data("feodotracker/feodotracker_ipblocklist_*.json") if not src: return {"status": "missing_raw"} rows = json.loads(src.read_text()) df = pd.DataFrame(rows) n_raw = len(df) if "ip_address" not in df.columns: return {"status": "error", "error": "unexpected feodotracker json schema"} df["ip_address"] = df["ip_address"].astype("string").str.strip().str.lower() df = df.drop_duplicates(["ip_address", "port", "malware"]) out = _fresh(PEXT / "feodotracker") df.to_parquet(out / "feodotracker_ipblocklist.parquet", index=False) df.to_csv(_fresh(EXPORTS / "feodotracker") / "feodotracker_ipblocklist.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows_raw": n_raw, "rows_clean": len(df), "unique_ips": int(df["ip_address"].nunique()), "malware_families": {k: int(v) for k, v in df["malware"].value_counts().items()}} # ----------------------------------------------------------- malwarebazaar def clean_malwarebazaar() -> dict: probe = RAW / "malwarebazaar" / "probe_status.json" src = _newest("malwarebazaar/malwarebazaar_daily_*.json") \ or _newest("malwarebazaar/malwarebazaar_get_recent_*.json") if not src: return {"status": "blocked", "reason": "no raw data; blob + API unreachable (see probe_status.json)", "probe": json.loads(probe.read_text()) if probe.exists() else None} rows = json.loads(src.read_text()) if isinstance(rows, dict): rows = rows.get("data", []) df = pd.DataFrame(rows) out = _fresh(PEXT / "malwarebazaar") df.to_parquet(out / "malwarebazaar_sample.parquet", index=False) return {"status": "ok", "rows": len(df), "file": src.name} # --------------------------------------------------------------- sanctions def _xml_first(el, *path: str) -> str | None: cur = el for p in path: cur = cur.find(p) if cur is None: return None return (cur.text or "").strip() or None def clean_sanctions_un() -> dict: import xml.etree.ElementTree as ET src = _newest("sanctions_un/un_consolidated_*.xml") if not src: return {"status": "missing_raw"} rows: list[dict] = [] counts = {"individual": 0, "entity": 0} for ev, el in ET.iterparse(str(src), events=("end",)): if el.tag not in ("INDIVIDUAL", "ENTITY"): continue kind = el.tag.lower() counts[kind] += 1 aliases = [a.text.strip() for a in el.findall("INDIVIDUAL_ALIAS/ALIAS_NAME") + el.findall("ENTITY_ALIAS/ALIAS_NAME") if a.text and a.text.strip()] name = " ".join(p for p in [_xml_first(el, "FIRST_NAME"), _xml_first(el, "SECOND_NAME"), _xml_first(el, "THIRD_NAME"), _xml_first(el, "FOURTH_NAME")] if p) rows.append({ "dataid": _xml_first(el, "DATAID"), "list_type": kind, "name": name or None, "n_aliases": len(aliases), "aliases": aliases[:10], "listed_on": _xml_first(el, "LISTED_ON"), "un_ref": _xml_first(el, "REFERENCE_NUMBER"), "comments": (_xml_first(el, "COMMENTS1") or "")[:500], }) el.clear() df = pd.DataFrame(rows) out = _fresh(PEXT / "sanctions_un") df.to_parquet(out / "un_consolidated.parquet", index=False) keep = ["dataid", "list_type", "name", "n_aliases", "listed_on", "un_ref"] df[keep].to_csv(_fresh(EXPORTS / "sanctions_un") / "un_consolidated.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows": len(df), "individuals": counts["individual"], "entities": counts["entity"]} _OFAC_COLS = ["ent_num", "sdn_name", "sdn_type", "program", "title", "call_sign", "vessel_type", "tonnage", "grt", "vessel_flag", "vessel_owner", "remarks"] def clean_sanctions_ofac() -> dict: src = _newest("sanctions_ofac/ofac_sdn_*.csv") if not src: return {"status": "missing_raw"} df = pd.read_csv(src, header=None, names=_OFAC_COLS, dtype="string", skipinitialspace=True) n_raw = len(df) for c in df.columns: df[c] = df[c].str.strip().str.strip('"').replace("-0-", None) df["ent_num"] = pd.to_numeric(df["ent_num"], errors="coerce").astype("Int64") df = df.drop_duplicates("ent_num") out = _fresh(PEXT / "sanctions_ofac") df.to_parquet(out / "ofac_sdn.parquet", index=False) df.to_csv(_fresh(EXPORTS / "sanctions_ofac") / "ofac_sdn.csv.gz", index=False, compression="gzip") return {"status": "ok", "rows_raw": n_raw, "rows_clean": len(df), "programs": {k: int(v) for k, v in df["program"].value_counts().head(12).items()}} def clean_sanctions_seco() -> dict: import xml.etree.ElementTree as ET src = _newest("sanctions_seco/seco_source_*.xml") if not src: return {"status": "missing_raw"} rows: list[dict] = [] n_targets = 0 list_date = None for ev, el in ET.iterparse(str(src), events=("start",)): if el.tag == "swiss-sanctions-list" and list_date is None: list_date = el.get("date") if el.tag != "target": continue n_targets += 1 names = [] for nm in el.findall(".//name"): parts = [np.findtext("value", default="").strip() for np in nm.findall("name-part")] whole = " ".join(p for p in parts if p) if whole: names.append(whole) if names: rows.append({"ssid": el.get("ssid"), "name": names[0], "n_name_variants": len(names), "alt_names": names[1:10]}) el.clear() df = pd.DataFrame(rows).drop_duplicates("ssid") out = _fresh(PEXT / "sanctions_seco") df.to_parquet(out / "seco_sanctions.parquet", index=False) df.to_csv(_fresh(EXPORTS / "sanctions_seco") / "seco_sanctions.csv.gz", index=False, compression="gzip") return {"status": "ok", "list_date": list_date, "targets_seen": n_targets, "rows_clean": len(df), "via": "OpenSanctions ch_seco_sanctions source.xml mirror"} def clean_sanctions_eu() -> dict: probe = RAW / "sanctions_eu" / "probe_status.json" return {"status": "blocked", "reason": ("EU consolidated-list bulk CSV now requires EU Login " "(verified 2026-09-24; 307->EU Login HTML even with " "?anonymous=true)"), "probe": json.loads(probe.read_text()) if probe.exists() else None} def clean_abuseipdb() -> dict: rows = [] for f in sorted(RAW.glob("abuseipdb/check_*.json")): try: d = json.loads(f.read_text()).get("data") or {} except (json.JSONDecodeError, OSError): continue rows.append({ "ip_address": d.get("ipAddress"), "abuse_confidence_score": d.get("abuseConfidenceScore"), "total_reports": d.get("totalReports"), "num_distinct_users": d.get("numDistinctUsers"), "last_reported_at": d.get("lastReportedAt"), "is_tor": d.get("isTor"), "is_whitelisted": d.get("isWhitelisted"), "usage_type": d.get("usageType"), "isp": d.get("isp"), "country_code": d.get("countryCode"), "domain": d.get("domain"), "hostnames": ";".join(d.get("hostnames") or []), }) df = pd.DataFrame(rows) n = len(df) if n == 0: return {"status": "missing_raw"} df["last_reported_at"] = pd.to_datetime(df["last_reported_at"], errors="coerce", utc=True) for c in ("abuse_confidence_score", "total_reports", "num_distinct_users"): df[c] = pd.to_numeric(df[c], errors="coerce").astype("Int64") out = _fresh(PEXT / "abuseipdb") df.to_parquet(out / "abuseipdb.parquet", index=False) df.to_csv(_fresh(EXPORTS / "abuseipdb") / "abuseipdb.csv.gz", index=False, compression="gzip") q_total = None qp = RAW / "abuseipdb" / "_ip_queue.json" if qp.exists(): try: q_total = len(json.loads(qp.read_text())) except (json.JSONDecodeError, OSError): pass flagged = int((df["abuse_confidence_score"].fillna(0) > 0).sum()) return {"status": "ok", "rows": n, "queue_total": q_total, "flagged_any_confidence": flagged, "flagged_50plus": int((df["abuse_confidence_score"].fillna(0) >= 50).sum()), "median_confidence": float(df["abuse_confidence_score"].median()), "coverage_reports": round(float(df["total_reports"].notna().mean()), 4)} # ----------------------------------------------------------- domain_health def clean_domain_health() -> dict: src = _newest("domain_health/domain_health_*.jsonl") if not src: return {"status": "missing_raw"} merged: dict[str, dict] = {} with src.open() as f: for line in f: try: r = json.loads(line) except json.JSONDecodeError: continue d = r.pop("domain", None) if not d: continue merged.setdefault(d, {}).update(r) df = pd.DataFrame([{"domain": d, **v} for d, v in merged.items()]) n = len(df) for c in ("dns_mx_exists", "dns_ns_exists", "dns_a_exists", "has_spf", "http_live", "https_ok", "parked_like"): if c in df: df[c] = df[c].astype("boolean") if "wayback_first_seen" in df: df["wayback_first_seen"] = pd.to_datetime( df["wayback_first_seen"], errors="coerce", utc=True) if "crtsh_first_seen" in df: df["crtsh_first_seen"] = pd.to_datetime( df["crtsh_first_seen"], errors="coerce", utc=True) out = _fresh(PEXT / "domain_health") df.to_parquet(out / "domain_health.parquet", index=False) df.to_csv(_fresh(EXPORTS / "domain_health") / "domain_health.csv.gz", index=False, compression="gzip") def cov(col: str): return round(float(df[col].notna().mean()), 4) if col in df else None def count_true(col: str) -> int: return int((df[col] == True).sum()) if col in df else 0 # noqa: E712 return {"status": "ok", "rows": n, "coverage_dns": cov("dns_a_exists"), "coverage_http": cov("http_live"), "coverage_wayback": cov("wayback_first_seen"), "coverage_crtsh": cov("crtsh_first_seen"), "dead_domains": n - count_true("dns_a_exists"), "parked_like": count_true("parked_like"), "http_live": count_true("http_live")} # -------------------------------------------------------------------- main CLEANERS = { "tranco": clean_tranco, "majestic": clean_majestic, "google_taxonomy": clean_google_taxonomy, "viseca": clean_viseca, "tabformer": clean_tabformer, "ieee_cis": clean_ieee_cis, "ulb_creditcard": clean_ulb_creditcard, "bipia": clean_bipia, "agentdojo": clean_agentdojo, "tensortrust": clean_tensortrust, "hackaprompt": clean_hackaprompt, "threatfox": clean_threatfox, "feodotracker": clean_feodotracker, "malwarebazaar": clean_malwarebazaar, "sanctions_un": clean_sanctions_un, "sanctions_ofac": clean_sanctions_ofac, "sanctions_seco": clean_sanctions_seco, "sanctions_eu": clean_sanctions_eu, "domain_health": clean_domain_health, "abuseipdb": clean_abuseipdb,} _LICENSES = { "tranco": "Tranco (research, attribution)", "majestic": "Majestic Million (attribution)", "google_taxonomy": "Google Merchant product taxonomy", "viseca": "Viseca public synthetic pack (SYNTHETIC TEST DATA)", "tabformer": "IBM TabFormer synthetic credit-card transactions (research)", "ieee_cis": "IEEE-CIS Fraud Detection via public HF mirror (competition data; unofficial mirror)", "ulb_creditcard": "ULB Credit Card Fraud via OpenML did 1597", "bipia": "Microsoft BIPIA (MIT)", "agentdojo": "AgentDojo (ETH; MIT)", "tensortrust": "Tensor Trust (HumanCompatibleAI; permissive)", "hackaprompt": "HackAPrompt (MIT; gated access)", "threatfox": "abuse.ch ThreatFox (free, attribution appreciated)", "feodotracker": "abuse.ch FeodoTracker (free, attribution appreciated)", "malwarebazaar": "abuse.ch MalwareBazaar (free, attribution; auth key for API)", "sanctions_un": "UN consolidated list (public data, (c) United Nations)", "sanctions_ofac": "OFAC SDN list (US Treasury, public domain)", "sanctions_seco": "SECO Swiss sanctions via OpenSanctions mirror (CC BY-SA 4.0 on mirror; Swiss public data)", "sanctions_eu": "EU consolidated list (public data; bulk download behind EU Login)", "domain_health": "protocol lookups + Wayback CDX + crt.sh (public services, bounded/cached)", "abuseipdb": "AbuseIPDB free tier (non-commercial, attribution; per-IP cached)",} def write_report(all_stats: dict[str, dict]) -> None: lines = [ "# External data quality report", "", f"Generated: {common.utcnow()} · cleaner: processing/clean_external.py · " f"raw cached in data/raw/<source>/ with provenance sidecars.", "", "| source | status | key numbers | license |", "|---|---|---|---|", ] for src, st in all_stats.items(): key = {k: v for k, v in st.items() if k not in ("status",) and not isinstance(v, (dict, list)) and v is not None} # flatten one level of nested stat dicts (e.g. tensortrust attacks/defenses) for k, v in st.items(): if isinstance(v, dict): for k2, v2 in v.items(): if not isinstance(v2, (dict, list)) and v2 is not None: key[f"{k}.{k2}"] = v2 keys = "; ".join(f"{k}={v}" for k, v in list(key.items())[:9]) extra = "" if st.get("integrity_checks") is not None: ok = all(st["integrity_checks"].values()) extra = " integrity=" + ("PASS" if ok else "FAIL") lines.append(f"| {src} | {st.get('status','?')}{extra} | {keys} | {_LICENSES[src]} |") if all_stats.get("hackaprompt", {}).get("status") == "blocked": lines += ["", "**HackAPrompt is gated on Hugging Face** (auto-approved terms). " "Export `LEASH_HF_TOKEN` with accepted terms, then rerun " "`make collect-external SRC=hackaprompt` and `make clean-external SRC=hackaprompt`."] lines += ["", "Full cleaned parquet: `data/processed/external/<source>/` (gitignored, reproducible). " "Tracked exports: `data/exports/external/<source>/` (samples / compact full sets).", "", "Integrity semantics: `integrity=PASS` verifies publisher-published constants " "(IEEE-CIS 590,540 rows / 20,663 frauds — expected count corrected from 20,661 after " "the mirror matched published Kaggle kernel value-counts exactly; ULB 284,807 rows / " "492 frauds; Viseca sha256 vs pack manifest).", ] (_fresh(EXPORTS) / "EXTERNAL_QUALITY_REPORT.md").write_text("\n".join(lines) + "\n") def main(argv: list[str]) -> int: sources = argv or list(CLEANERS) all_stats: dict[str, dict] = {} if (EXPORTS / "stats").exists(): for p in (EXPORTS / "stats").glob("*.json"): all_stats[p.stem] = json.loads(p.read_text()) for src in sources: if src not in CLEANERS: print(f"unknown source: {src}", file=sys.stderr) return 2 print(f"[clean] {src} ...", file=sys.stderr, flush=True) try: st = CLEANERS[src]() except Exception as e: # noqa: BLE001 — report and continue st = {"status": "error", "error": f"{type(e).__name__}: {e}"} all_stats[src] = st _fresh(STATS).joinpath(f"{src}.json").write_text(json.dumps(st, indent=2, default=str)) print(json.dumps({"source": src, "status": st.get("status")}), file=sys.stderr, flush=True) write_report(all_stats) print(json.dumps({"cleaned": sources, "report": str(EXPORTS / 'EXTERNAL_QUALITY_REPORT.md')})) return 0 if __name__ == "__main__": raise SystemExit(main(sys.argv[1:]))